Index

A

activities (simprov.provenance.ProvenanceGraph property) Activity (class in simprov.provenance) ActivityAlreadyDefinedException ActivitySpecification (class in simprov.specifications) ActivitySpecificationNotFoundException

add_activity() (simprov.provenance.ProvenanceGraph method) add_agent() (simprov.provenance.ProvenanceGraph method) add_dependency() (simprov.provenance.ProvenanceGraph method) add_entity() (simprov.provenance.ProvenanceGraph method) AgentSpecificationNotFoundException are_dependencies_are_forming_a_cycle() (simprov.provenance.ProvenanceGraph method)

C

chain_provenance_activity() (simprov.provenance.ProvenanceGraph method)

check_dependencies_forms_cycle() (simprov.core.SimProv method) cytoscape_data() (simprov.provenance.ProvenanceGraph method)

D

delete_study_state() (simprov.core.SimProv method)

E

entities (simprov.provenance.Activity property) (simprov.provenance.ProvenanceGraph property) Entity (class in simprov.provenance)

EntityAlreadyDefinedException EntitySpecification (class in simprov.specifications) EntitySpecificationNotFoundException execute_rule() (simprov.rule_engine.RuleEngine method)

G

get_activity_specification() (simprov.specifications.SpecificationManager method) get_agent_specification() (simprov.specifications.SpecificationManager method)

get_entity_specification() (simprov.specifications.SpecificationManager method) get_study_state() (simprov.core.SimProv method)

I

InvalidActivityException InvalidActivitySpecificationException InvalidEntitySpecificationException InvalidRuleResultException InvalidRuleSpecificationException

InvalidSpecificationException is_activity() (simprov.provenance.ProvenanceGraph method) is_agent() (simprov.provenance.ProvenanceGraph method) is_editable() (simprov.specifications.SpecificationManager method) is_entity() (simprov.provenance.ProvenanceGraph method)

L

load_rules() (simprov.rule_engine.RuleEngine method) load_rules_and_specifications() (simprov.core.SimProv method)

load_specification_file() (simprov.specifications.SpecificationManager method) load_study_state() (simprov.core.SimProv method)

M

module simprov.exceptions

N

node_data() (simprov.provenance.ProvenanceGraph method) normalize_activity() (simprov.specifications.SpecificationManager method)

normalize_agent() (simprov.specifications.SpecificationManager method) normalize_entity() (simprov.specifications.SpecificationManager method) NoRuleFoundException

O

OccurenceModifier (class in simprov.specifications)

P

PrimaryKeyAttributeNotDefinedException process_event() (simprov.core.SimProv method)

propagate_visibility_information() (simprov.provenance.ProvenanceGraph method) ProvenanceGraph (class in simprov.provenance)

R

register_rule() (simprov.rule_engine.RuleEngine method) remove_dependency() (simprov.provenance.ProvenanceGraph method) reprocess_events_from_file() (simprov.core.SimProv method)

Rule (class in simprov.rule_engine) rule() (in module simprov.rule_engine) RuleEngine (class in simprov.rule_engine)

S

save_event_log() (simprov.core.SimProv method) SimProv (class in simprov.core)

simprov.exceptions module SpecificationManager (class in simprov.specifications)

T

todict() (simprov.provenance.Activity method) (simprov.provenance.Entity method)

U

update_activity_dependencies() (simprov.provenance.ProvenanceGraph method)

update_entity_attributes() (simprov.provenance.ProvenanceGraph method)

V

validate_activity() (simprov.specifications.SpecificationManager method)

validate_agent() (simprov.specifications.SpecificationManager method) validate_entity() (simprov.specifications.SpecificationManager method)

W

write_study_state() (simprov.core.SimProv method)